Showing posts with label genetics. Show all posts
Showing posts with label genetics. Show all posts

Tuesday, January 8, 2019

She Has Her Mother's Laugh

She Has Her Mother's Laugh: The Powers, Perversions, and Potential of Heredity
© 2018 Carl Zimmer
672 pages



Overhearing discussion of heredity a few hundred years ago would have meant only one thing:  being in the presence of noblemen, who stood to inherit their fathers' titles, lands, rights, and responsibilities.  Heredity quickly became a scientific concept,  and is now more commonly associated with biology than law, but genes aren't all we inherit. She Has Her Mother's Laugh is a meaty exploration of the history and present tracking of inheritance, genetic and otherwise.

Much of the book is a history of attempts to figure out heridity, beginning with mental impairment and the suspicion that it was something which could be passed down from generation to generation. This came of age when interest in biological inheritance was white-hot: Darwin and Huxley were at work, and various animal fanciers were creating ever-more elaborate breeds of pigeons and the like by monitoring traits from generation to generation and promoting the birth of different  variants.  It wasn't at all difficult for people to decide that imbecility was a distinct trait which could be controlled against, if all its present carriers were prevented from reproducing. This 'effort' was initially conceived as sterilization, but in the 1940s those efforts took on ghastly and murderous proportions Hitler's regime.

Aside from the outstandingly massive moral problems of controlling other people, including their ability to beget life,  there's also the scientific problem that "imbecility" is not one thing, created  by one trait. Mental impairments are diverse, and stem from all manner of biological hiccoughs. Many people in the Victorian age who were 'imbeciles' merely suffered from a metabolic disruption: they were unable to process a substance common in foodstuffs, and ingesting it slowly poisoned them, giving their skin an odd hue and eroding their mental faculties.  Children who were diagnosed early with this syndrome could be put on an appropriate diet, and be perfectly healthy members of society. Biology is chemistry in action, but the genes aren't the only chemicals in the solutions: they're constantly interacting with the substances of their mother's body, or the outside environment. Even if eugenicists had won, we would still have sick and infirm people, because there are so many variables. 

Other 'inheritance' issues are similarly problematic.  Take race, for instance; the human eye might look at a Norwegian, a Nigerian, and a Chinese citizen and declare them to be three obviously different kinds of people, but if that same eye were to look at their genes it would be unable to tell much of a difference beyond ordinary individual distinctions. Humans, for all our passionate in-grouping and out-grouping,  are far more alike than we are different -- biologically.  That doesn't mean our in-grouping and out-going is irrelevant; it  probably won't ever go away, because crucial to understanding human inheritance is realizing we are fundamentally cultural creatures. We don't come out of the womb sniffing wine and venturing opinions about the ballet, but we're as hungry for teaching as we are for food. When compared to chimpanzee juveniles, human youths are far more imitative.   Heredity cannot only apply to genes, or even biology (we also inherit bacteria from our parents):  it has to apply to culture, as well,

Zimmer also includes a chapter on CRISPR, and the admittedly scary potential that puts in our hands. Yes, we can eradicate genetic disease. We  can also turn our children into gross experiments, tinkering with their bodies to produce barbies or ubermensch. Society needs to think long and hard about the implications.

She Has Her Mother's Laugh is a steak of a book, of obvious interest to anyone with an appetite for human biology.

Some of my highlights:
"In Morgan’s own research on flies, he had learned to respect the power of the environment. His students discovered one strain of flies that developed normally if they were born in the summer but tended to sprout extra legs if they were born in the winter. It turned out that the researchers could get the same outcomes in their lab simply by changing the temperature in which they reared the fly eggs. It was thus meaningless to talk about the effect of their mutation without taking into account their environment."

“It was my child who taught me to understand so clearly all people are equal in their humanity and that all have the same human rights,” Pearl [Buck] wrote. “Though the mind has gone away, though he cannot speak or communicate with anyone, the human stuff is there, and he belongs to the human family.”

"To eliminate imperfection would demand eliminating humanity itself."

"We were three people of African, Asian, and European descent from three corners of the world. Three races, some might say. And yet we shared far more than what set us apart."

"Textbooks say that the human body has about two hundred cell types, but recent studies have rendered that figure a laughable understatement. No one can say how many cell types there are, because the more scientists examine cells the more they break down into more typed. Immune cells may all carry out the same mission to save us from pathogens and cancer, but they are an army with hundreds of divisions. All our cell types are seperate branches on the body's genealogical tree, like rival dynasties descended from a first monarch."

Wednesday, July 11, 2018

A Crack in Creation

A Crack in Creation:  Gene Editing and the Unthinkable Power to Control Evolution
© 2017 Jennifer Doudna and Sam Sternberg



"No longer at the mercy of the reptile brain, we can change ourselves. Think of the possibilities." - Carl Sagan

A few years ago I tuned into the middle of a science-news podcast and encountered a panel of otherwise sensible people caught up in an enthusiastic conversation about...crisper? Crisper drawers?  I'd missed something.

What I'd missed was a story about CRISPR, a gene-editing tool with enormous and explosive potential for  medicine and agriculture.  The outgrowth of attempts to use bacteria as microsurgeons,  CRISPR allows for fine-tuned genetic manipulation with reproducable results.  The first half of A Crack in Creation delivers the story of how CRISPR as a tool was discovered, and this history of scientific investigation is followed by the author's thoughts on the implications. While optimistic about the tool's applications for agriculture and medicine,   she admits that the potential for abuse in modifying the human genome itself is high.

Humans have been manipulating domesticated populations' genomes for millennia, of course, but with clumsier methods:   finding animals with expressed traits we favor, and breeding them while taking the rest home to cook.  We have toyed with forcing mutations with chemical and radioactive agents, but the results thereof are unpredictable.  Now,  nearly two decades into the 21st century,  we have the ability to make fine-tuned adjustments, with applications both serious and trivial.  An internal biological weapon used to disarm viruses  and effect cellular repair can instead be used as a tool to remove  and supply whatever genes we desire.

  We've already created mosquito populations which have been stripped of the ability to propagate malaria, and -- depending on trials and the weight of government oversight --  may use pigs to grow human organs for use in transplants.   As Doudna warns, however,   modifying humans -- modifying ourselves -- takes us into an area fraught with ethical quandaries.    She speculates that we may wish to discriminate between germ cells (sperm and egg cells, which would be capable of reproducing whatever edits we make) and somatic cells, which constitute the rest of the body.  Unless, of course, eugenics makes a comeback and we decide to create a race of supermen, a la Khan Noonian Singh. Then, germ cells would be fair game. (Okay, the bit about Khan is just me. As one of the principle discoverers of CRISPR, Doudna is seriously concerned about the ethical implications, to the point that she's had a literal dream about Hitler contacting her with an interest in learning how to use CRISPR.)

Although I'm still trying to understand the mechanics of it (as much as I like biology, genetics is a definite weak point for me),  the potential for this excites me. Medicine is going to go very interesting places in the decades to come.


Thursday, February 11, 2016

Genome

 Genome: The Autobiography of a Species in 23 Chapters
© 1999 Matt Ridley
317 pages



  The human genome is a recipe book, divided into 23 chapters, but considerably larger than Matt Ridley’s Genome. Were it to scale, he writes, a genuine version of the genome in book form would be closer to the size of a stack of bibles.  Genome visits each of the human cell’s 23 chromosomes in turn to learn a little something about human nature. This is not An Ancestor’s Tale in miniature, as Ridley addresses the entire natural history of human kind in the first chapter.   Subsequent chapters cover subjects as diverse as the genetic basis for language and sex differentiation, and as ambitious as free will.  Health and disease occupy much of Ridley’s attention; after genetic disease is covered by itself,  these diseases  are used to illustrate other subjects.    One oft-used example is that of the prevalence of sickle-cell anemia among people of immediate African ancestry;   carrying one allele for it greatly reduces exposure to malaria, a scourge of the continent.  For the genes, losing a few carriers to sickle-cell anemia is a better bargain than losing a greater number to malaria. In evolution, as in economics, there are no solutions – only trade-offs.  Nothing is simple; many conditions like asthma are caused not by one gene flubbing, but by different genes in different populations. Genetics is a subject that can quickly get too detailed for lay readers to enjoy, but Ridley finds the right balance between narrative and specifics, and he has an sly wit.  In a chapter on the sinister history of eugenics, he notes that the Soviet Union never adopted a eugenics program; they were more interested in murdering clever people than limited ones.  The take-home lesson is the human body is not one thing with a becraniumed control tower;   even our flesh is dynamic,  our genes warring with one another and vying for control between themselves and the brain they forged and maintain.   Though it may lose something in being slightly dated, Genome is an eye-opening bit of popular science that offers plenty of insight into history, as well. There was a reprint in 2006 that may have more current information.

Related:

Wednesday, September 4, 2013

Paleofantasy

Paleofantasy: What Evolution Really Says about Sex, Diet, and How We Live
© 2013 Marlene Zuk
328 pages


Despite its name, Paleofantasy is not a deliberate debunking of arguments for a 'paleo diet' and a paleo lifestyle.  Although Zuk does take aim at paleo proponents time and again, her argument approaches the same ideas from a different tack. Rather than assume that people ought to live the lifestyle our bodies evolved to expect, and then look for the science that informs that lifestyle, Zuk first asks:  what does biology tell us about the way our ancestors once lived, and can that information be used to help us today?  Subsequent chapters are a brief survey of the evolutionary heritage of our diet, our sex and childrearing practices, modes of exercise, and health.  The essential point of Paleofantasy is that evolution is an ongoing process: humanity is not a finished product, nor a monolithic species. What is true for some populations doesn't necessarily hold for others.  Thus, studying the lifestyle of our ancestors isn't particularly helpful, because they had different lifestyles depending on their local climate, and each made micro-adaptions in its own way.  Two populations of mountain-living people ,in Tibet and the Andres, both adapted to living in such thin air -- but in two different evolutionary ways. Her message to those interested in paleo living is this: don't get carried away.  By all means, don't overeat and get in a lot of exercise -- but do it because it makes sense now, not because the ancestors starved and were active.

Although the book will probably succeed in cooling the jets of the moderately interested, for more ardent practitioners, she will doubtless fall short, and not just because of defensiveness on readers' part. A staple of paleo nutrition is that grains are of the agricultural devil. Zuk's is response is to point out that look, we've evolved a gene that lets us process starch.  We've adapted! Evolution in action.  She does not, however, address the concern of anti-grain readers that while we can eat grain, we shouldn't because of its insulin-spiking effects and the subsequent relationship with diabetes and obesity.  To borrow an example from her book, also used in Sean Carroll's The Making of the Fittest: while there are snakes who can survive eating poisonous toads,  that doesn't mean they should turn poisonous toads into the bedrock of their snake food-pyramid. Likewise, she doesn't address the rationale that palo-fitness people use in pushing for short, intense workouts, namely that a high level of stress for a short time is better at building bone and muscle than a marginal level of stress done for long intervals.  She simply says "Hey, there are people who have adapted to running really long times."

Paleofantasy doesn't necessarily impress, but it does offer a moderating voice to those who can get carried away by the prospect of living like our ancestors to the point of going to bed with a Sounds of the Nighttime Forest CD playing, because that's what our brains expect.

Related:
Antifragile, Nassim Nicholas Taleb (which includes a section on high-stress short-term exercise)
Wheat Belly, William Davis;  Good Calories Bad Calories, Gary Taubes (on the problems of the modern diet)
Catching Fire: How Cooking Made us Human, Richard Wrangham
Sex on Six Legs, Marlene Zuk.

Wednesday, August 21, 2013

The Making of the Fittest

The Making of the Fittest: DNA and the Ultimate Forensic Record of Evolution
304 pages
© 2006 Sean B. Carroll



Sean B. Carroll's The Making of the Fittest examines the genetics of evolution, relating to readers not only how changes come about and are transmitted to the next generation, but how our genes demonstrate the passing of an evolutionary river out of Eden with the same surety that the flattened plains of the midwest testify to the passing of glaciers eons ago. After detailing the myriad ways in which genetics illuminates the inner workings and history of evolution, Carroll casts a critical eye against proponents of intelligent design and creationism.  In the stressful, chaotic world which all organisms inhabit, where circumstances and relations between prey and predator are in a state of constant flux, there is no room for grand designs:  only on-the-hoof and on-the-fly jury-rigging to respond to a given moment's crisis will do. Making of the Fittest supplies readers with both broad principles (the evolutionary arms race, in which no species is ever the 'perfected' winner, only carrying temporary momentum in the battle for survival) and specific practices, like how complex organs are formed by cobbling together smaller ones.  Though a short-enough work, it seems more technical than many other works on biology, probably because it focuses on the nitty-gritty details of genetics: one chapter is called "The Everyday Math of Evolution", and concerns mutation rates. Though of interest to general science readers, a little genetic refresher might be helpful before starting in.